Saturday, October 1, 2011

Study notes for the test!


DNA test


5’ g cap- Guanine cap at the 5’ end of the RNA

Anticodon - base pairs with a complementary codon on the mRNA

Base- Pair substitution - when the point mutation results in replacement of a pair of complimentary nucleotides with another nucleotide pair

Chargaff- Noticed a ratio between the nucleotides bases (A=T C≡G) where A and G both have 2 rings

DNA - (Deoxyribonucleic acid) Backbone of DNA is the alternating phosphates and sugars. It is a double helical structure. And the two strands are anti parallel. See Glycosyl Phosphodiester, and hydrogen bonds

Frameshift Mutations - Mutations that dont happen in multiples of 3, improperly group codons.

Extrons - The coding regions

Gene - Sequence that can be transcribed and translated into proteins

Glycosyl (Intramolecular) - Sugar + nitrogenous base

Griffith - 1928 studied bacterium and developed the phenomenon called transformation. experimental observations led to scientist to suspect that protein is not the hereditary material.

Gyrase - Releases the tension

Introns - noncoding segment

Helicase - An enzyme untwists and separates the strand

Hershey and Chase - 1952, helped confirmed that DNA was the genetic material using viruses and bacteria. The bateriophages were radioactive on the protein coat. However the genetic material was uncontaminated. However when the genetic material was radioactive, the host it infects is also radioactive

Hydrogen Bonds (intermolecular) - Between Nitrogenous base

intermolecular- Between

intramolecular- with in

Ligase - Joins phosphate backbone together

Missense Mutation - Code for an amino acid but change the indicated amino acid

Morgan - Showed that Morgan’s group showed that genes are located on chromosomes.

pre-mRNA - (RNA transcript, primary transcript)

Nonsense Mutations - Change an amino acid codon into a stop codon nearly always leading to a nonfunctional protein.

Nucleotides - (Sugar: deoyribose Phosphate Base: ATCG) molecules that consist of a five carbon sugar with a nitrogenous base attached to their 1’ carbon and a phosphate group attached to their 5’ carbon. The phosphate group is negatively charged.

Nucleoside - Contains only a sugaar and a nitrogen base

Okazaki Fragments: Single stranded DNA on the Lagging Strand

Phosphodiester (intramolecular)- Sugar + phosphate

Point Mutation - Chemical Change in just one base pair of a gene

Polymerase l - proofreads and replaces the primers with DNA Nucleotide.

Polymerase III - Elongates new DNA strand by adding on to the 3’ end

Primase: An RNA polymerase that links ribonucleotides that are complementary to the DNA temperate into the primer. Create RNA primers that serve as a signal to DNA Polymerase III

Primer: A short chain segment of RNA (10 nucleotides long in Eukaryotes)

Promotor: The “Upstream region” where transcription begins, binding site for RNA polymerase and several dozen nucleotides upstream of the start point

Purine - The A and G in the Nitrogenous bases

Pyrimidine - The T and C in the nitrogenous bases

Ribose (RNA) - single ringed sugar that has an extra hydroxyl (OH) group on the 2’ carbon ring than the deoxyribose sugar in DNA

RNA polymerase II - Separates the DNA Strands at the appropriate point and bonds the RNA nuceotides as they base-pair long the DNA template

Semiconservative replication: the two strands of the parental molecule separate and each functions as a template for synthesis of a new complementary strand

Silent Mutation: Alterations of nucleotides still indicate the same amino acids because of redundancy in the genetic code

Single stranded Binding Protein - Keeps the single stranded DNA Stabilized

snRNP - has several protein molecules and a small nuclear RNA molecule (snRNA)

Spliceosome - Contains several proteins and several small nuclear ribonucleoproteins (snRNPs)

Terminator: Signals the end of Transcription

tRNA - Transfer RNA

Transcription Factors - Proteins that recognize the promotor region and bind to it (5’TATA3’ box)

Transformation - introduction of foreign DNA usually by a plasmid or virus, into a bacterial cell

Watson and Crick - 1950 Discovery of the double helix by building models to conform to X-ray data

Wobble - allows for the third position to have a different nucleotide but code for the same amino acid


Replication

Acts

Names

Characters

Roles

1

Initiation

-Helicase

-Single stranded Bonding Protein

-Gyrase

-Primase


2

Elongation

-DNA Polymerase III


3

Termination

-DNA Polymerase I

-Ligase




Transcription

Acts

Names

Characters

Roles

1

Initiation

  • 5’ TATA 3’ on template
  • Transcription Factors
  • RNA Polymerase II used for mRNA

This is the Transcription Initiation Complex

Eukaryotes are different cause they have 3 different types of RNA polymerase

2

Elongation

- RNA Polymerase II


3

Termination

AAUAA on RNA

AATAA on the Sense/Coding Strand

In Prokaryotes RNA polymerase stop transcription right at the end of the terminator

*at the end of the process the pre-mRNA has to be modified to put a Guanine cap at the 5’ end. As well at the 3’ there is and enyzme that adds about 50-250 adenine nucleotides, Poly (A) tail.(protects from hydrolytic enzymes)



Translation

Acts

Names

Characters

Roles

1

Initiation

(prokaryotic)

- 5‘AUG 3’

  • 30s Ribosomal Subunit
  • 50s Ribosomal Subunit
  • tRNA

Translation begins at the P site

2

Elongation

tRNA

- mRNA is read 5’ ->3’

  • Amino acids join togther by a petide bond
  • E site releases tRNA
  • New tRNA enters through the A site

3

Termination

-DNA Polymerase I

-Ligase

Stop Codons (UAA, UGA, UAG)





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